R-universe - bjoelle (Joëlle Barido-Sottani)

FossilSim - Simulation and Plots for Fossil and Taxonomy Data

Simulating and plotting taxonomy and fossil data on phylogenetic trees under mechanistic models of speciation, preservation and sampling.

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5.65 score 1 stars 2 dependents 82 scripts 380 downloads

FossilSimShiny - Shiny Application for 'FossilSim'

A shiny application based on 'FossilSim'. Used for simulating tree, taxonomic and fossil data under mechanistic models of speciation, preservation and sampling.

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3.00 score 596 downloads

ML.MSBD - Maximum Likelihood Inference on Multi-State Trees

Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani, T. G. Vaughan and T. Stadler (2018) <doi:10.1098/rsif.2018.0512>.

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2.00 score 7 scripts 188 downloads