Package: ML.MSBD 1.2.1

ML.MSBD: Maximum Likelihood Inference on Multi-State Trees

Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani, T. G. Vaughan and T. Stadler (2018) <doi:10.1098/rsif.2018.0512>.

Authors:Joelle Barido-Sottani [aut, cre]

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ML.MSBD.pdf |ML.MSBD.html✨
ML.MSBD/json (API)
NEWS

# Install 'ML.MSBD' in R:
install.packages('ML.MSBD', repos = c('https://bjoelle.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 7 scripts 159 downloads 3 exports 8 dependencies

Last updated 4 years agofrom:cc6b672e81. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 21 2024
R-4.5-winOKOct 21 2024
R-4.5-linuxOKOct 21 2024
R-4.4-winOKOct 21 2024
R-4.4-macOKOct 21 2024
R-4.3-winOKOct 21 2024
R-4.3-macOKOct 21 2024

Exports:likelihood_MSBDlikelihood_MSBD_unresolvedML_MSBD

Dependencies:apecodetoolsdigestforeachiteratorslatticenlmeRcpp

Using ML.MSBD

Joelle Barido-Sottani

Rendered fromUsing_ML.MSBD.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2019-09-26
Started: 2018-07-09