{
  "_id": "6a481777e06c18f0a652c085",
  "Package": "FossilSimShiny",
  "Title": "Shiny Application for 'FossilSim'",
  "Version": "1.1.2",
  "Authors@R": "c(person(\"Titouan\", \"Chambe\", email=\"titouan.chambe@u-psud.fr\", role=c(\"aut\")),\nperson(\"Joelle\", \"Barido-Sottani\", email=\"joelle.barido-sottani@m4x.org\",role=c(\"aut\",\"cre\",\"cph\")),\nperson(\"Rachel\", \"Warnock\", email=\"rachel.warnock@fau.de\", role=c(\"aut\",\"cph\"))\n)",
  "Description": "A shiny application based on 'FossilSim'. Used for\nsimulating tree, taxonomic and fossil data under mechanistic\nmodels of speciation, preservation and sampling.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2",
  "VignetteBuilder": "knitr",
  "Language": "en-US",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 20:07:44 UTC",
    "User": "root"
  },
  "Author": "Titouan Chambe [aut], Joelle Barido-Sottani [aut, cre, cph],\nRachel Warnock [aut, cph]",
  "Maintainer": "Joelle Barido-Sottani <joelle.barido-sottani@m4x.org>",
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev zlib1g-dev",
  "Repository": "https://bjoelle.r-universe.dev",
  "Date/Publication": "2024-04-30 02:33:54 UTC",
  "RemoteUrl": "https://github.com/cran/FossilSimShiny",
  "RemoteRef": "HEAD",
  "RemoteSha": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
  "_user": "bjoelle",
  "_type": "src",
  "_file": "FossilSimShiny_1.1.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/7ba1f2e9433de595bf32ffc99e1f6597f10bb113bf0b83158c45cef3c4b6b943",
  "_filesize": 1810860,
  "_sha256": "7ba1f2e9433de595bf32ffc99e1f6597f10bb113bf0b83158c45cef3c4b6b943",
  "_expires": "2026-10-11T20:11:34.000Z",
  "_created": "2026-07-03T20:07:44.000Z",
  "_published": "2026-07-03T20:11:35.816Z",
  "_jobs": [
    {
      "job": 85065190424,
      "time": 156,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8074127846"
    },
    {
      "job": 85065190405,
      "time": 148,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8074126334"
    },
    {
      "job": 85065190394,
      "time": 151,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8074122488"
    },
    {
      "job": 85065190418,
      "time": 191,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8074128328"
    },
    {
      "job": 85064834176,
      "time": 197,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8074098266"
    },
    {
      "job": 85065190379,
      "time": 162,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8074129060"
    },
    {
      "job": 85065190426,
      "time": 82,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8074114252"
    },
    {
      "job": 85065190495,
      "time": 82,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8074114210"
    },
    {
      "job": 85065190411,
      "time": 98,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8074117259"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367",
  "_status": "success",
  "_upstream": "https://github.com/cran/FossilSimShiny",
  "_commit": {
    "id": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
    "author": "Joelle Barido-Sottani <joelle.barido-sottani@m4x.org>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.2\n",
    "time": 1714444434
  },
  "_maintainer": {
    "name": "Joelle Barido-Sottani",
    "email": "joelle.barido-sottani@m4x.org",
    "login": "bjoelle",
    "description": "",
    "uuid": 14575423
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "shiny",
      "version": ">= 1.7.1",
      "role": "Imports"
    },
    {
      "package": "shinyjs",
      "role": "Imports"
    },
    {
      "package": "FossilSim",
      "role": "Imports"
    },
    {
      "package": "TreeSim",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "bjoelle",
      "count": 4,
      "uuid": 14575423
    }
  ],
  "_userbio": {
    "uuid": 14575423,
    "type": "user",
    "name": "Joëlle Barido-Sottani",
    "followers": 19
  },
  "_downloads": {
    "count": 638,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FossilSimShiny"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FossilSimShiny.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bjoelle",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2022-05-31"
    },
    {
      "version": "1.1.0",
      "date": "2023-11-02"
    },
    {
      "version": "1.1.1",
      "date": "2023-12-18"
    },
    {
      "version": "1.1.2",
      "date": "2024-04-29"
    }
  ],
  "_exports": [
    "launchFossilSimShiny"
  ],
  "_help": [
    {
      "page": "launchFossilSimShiny",
      "title": "Run the app in a web browser",
      "topics": [
        "launchFossilSimShiny"
      ]
    }
  ],
  "_readme": "https://github.com/cran/FossilSimShiny/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "clusterGeneration",
    "coda",
    "codetools",
    "colorspace",
    "combinat",
    "commonmark",
    "cpp11",
    "DEoptim",
    "deSolve",
    "digest",
    "doParallel",
    "dplyr",
    "expm",
    "fastmap",
    "fastmatch",
    "fontawesome",
    "foreach",
    "FossilSim",
    "fs",
    "geiger",
    "generics",
    "glue",
    "htmltools",
    "httpuv",
    "igraph",
    "iterators",
    "jquerylib",
    "jsonlite",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "maps",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "mnormt",
    "mvtnorm",
    "ncbit",
    "nlme",
    "numDeriv",
    "optimParallel",
    "otel",
    "phangorn",
    "phytools",
    "pillar",
    "pkgconfig",
    "promises",
    "purrr",
    "quadprog",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "sass",
    "scatterplot3d",
    "shiny",
    "shinyjs",
    "sourcetools",
    "stringi",
    "stringr",
    "subplex",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidytree",
    "TreeSim",
    "utf8",
    "vctrs",
    "withr",
    "xtable",
    "yulab.utils"
  ],
  "_vignettes": [
    {
      "source": "hosting.Rmd",
      "filename": "hosting.html",
      "title": "Hosting 'FossilSimShiny' on a Web Server",
      "author": "Titouan Chambe",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "Preface",
        "Dependencies",
        "R",
        "Dependencies for building a Shiny server from source",
        "R packages we need",
        "Installing Shiny Server",
        "Putting the app on the server",
        "Firewall tweaks",
        "Starting Shiny Server",
        "Further Reading"
      ],
      "created": "2022-05-31 09:30:08",
      "modified": "2024-04-30 02:33:54",
      "commits": 4
    },
    {
      "source": "fossilSimShiny.Rmd",
      "filename": "fossilSimShiny.html",
      "title": "How to use the 'FossilSimShiny' app: a basic guide of the main functionalities",
      "author": "Titouan Chambe",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Contents",
        "Launching the app",
        "Phylogenetic Tree",
        "Generating a tree",
        "Importing a tree from Newick format",
        "Generating Taxonomy",
        "Simulating Fossils",
        "Saving your tree as a .png",
        "Last words",
        "Additional information"
      ],
      "created": "2022-05-31 09:30:08",
      "modified": "2023-11-02 14:30:45",
      "commits": 2
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "fossilsimshiny",
  "_universes": [
    "bjoelle"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-07-03T20:10:17.000Z",
      "distro": "resolute",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/3ab268b496c4059af2cc4712b134fae3f913fef1cd9cb2e4bfecef0aa9155e0e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-07-03T20:10:09.000Z",
      "distro": "resolute",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/c7f79f2cb92364d11a343959de0d0671700207a157d2e92b6601d98367278caa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-07-03T20:09:53.000Z",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/c4faa7e2fa7979ed9476aaa2871ecafaaf748c3c20627f8968c374d8e52ce58c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-07-03T20:10:20.000Z",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/c6b7483f2f2b1ce7933438ac04bf17e7d274da56f44e422806e35c7fd56432f1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.2",
      "date": "2026-07-03T20:10:45.000Z",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/9e5fb15adefa453954786f75fdcffdbd184fe0e4ebea25c87aaecf1b9b138e84",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-07-03T20:08:58.000Z",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/d9fee667aa7b04db5097555e1ac364ae3e8b48864da665c7ca5da55ffbb73e4f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-07-03T20:08:58.000Z",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/8ae02001cee4dcaced01d1ac821358e1ce8b802163a5da4af4581338ea4bc6d1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-07-03T20:09:14.000Z",
      "commit": "e3514c14ebf941963f33fa61aa2ac56fcea110c7",
      "fileid": "https://r2.ropensci.org/35efdfeb3a9bd80b09118dbae1cd10add6b90bc7a07db4cd3090e52b9e604720",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bjoelle/actions/runs/28681176367"
    }
  ]
}