Changes in version 1.2.1 (2021-04-16) - Updated dependencies of the package. No functional changes. Changes in version 1.2.0 (2019-09-26) - Added parallel implementation for the ML inference using the package doParallel. Changes in version 1.1.1 (2019-03-07) - Modified examples to use fixed trees instead of randomly generated ones (for compatibility with future R releases) Changes in version 1.1.0 (2018-07-09) - Fixed bug that could lead to incorrect likelihood calculation when using trees with collapsed clades - Removed invalid real time mode option from ML inference - Added vignette to the documentation